![Transcription factories in a Hela cell [from Cook PR (1999) Science 284, 1790]](../images/pombo.png)
Bartlett, J., Blagojevic, J., Carter, D., Eskiw, C., Fromaget, M., Job, C., Shamsher, M., Faro Trindade, I, Xu, M., and Cook, P.R. (2006). Specialized transcription factories. Biochem. Soc. Symp. 73, 67-75. [PubMed]
Bon, M., Marenduzzo, D., Cook, P.R. (2006). Modeling a self-avoiding chromatin loop: relation to the packing problem, action-at-a-distance, and nuclear context. Structure 14, 197–204. [PubMed]
Marenduzzo, D., Micheletti, C., and Cook, P.R. (2006). Entropy-driven genome organization. Biophys. J. 90, 3712-3721. [PubMed]
Bon, M., McGowan, S., and Cook, P.R. (2006). Many expressed genes in bacteria and yeast are transcribed only once per cell cycle. FASEB J. 20, 1721-1723. [PubMed] [Supporting on-line information; search for a gene of interest; downloads]
Faro-Trindade, I., and Cook, P.R. (2006). A conserved organization of transcription during embryonic stem cell differentiation and in cells with high C value. Mol. Biol. Cell 17, 2910-2920. [PubMed]
Toan, N.M., Marenduzzo, D., Cook, P.R., and Micheletti, C. (2006). Depletion effects and loop formation in self-avoiding polymers. Phys. Rev. Lett. 97, 178302. [PubMed]
Faro-Trindade, I., and Cook, P.R. (2006). Transcription factories: structures conserved during differentiation and evolution. Biochem. Soc. Trans. 34, 1133-1137. [PubMed]
Marenduzzo, D., Finan, K., and Cook, P.R. (2006). The depletion attraction: an underappreciated force driving cellular organization. J. Cell Biol. 175, 681-686. [PubMed]
Kimura, H., and Cook, P.R. (2007). Dynamic chromatin loops and the regulation of gene expression. In ‘Nuclear dynamics: molecular biology and visualization of the nucleus’; K. Nagata, and T. Takeyasu, Eds; Springer,Japan.
Marenduzzo, D., Faro-Trindade, I., and Cook, P.R. (2007). What are the molecular ties that maintain genomic loops? Trends Genet. 23, 126-133. [PubMed]
Fromaget, M., and Cook, P.R. (2007). Photobleaching reveals complex effects of inhibitors on transcribing RNA polymerase II in living cells. Exp. Cell Res. 313, 3026-3033. [PubMed]
Escargueil A.E., Poindessous, V., Soares, D.G., Sarasin, A., Cook, P.R., and Larsen, A.K. (2008). Influence of irofulven, a transcription-coupled repair-specific antitumor agent, on RNA polymerase activity: stability and dynamics in living mammalian cells. J. Cell Sci. 121, 1275-1283. [PubMed]
Xu, M., and Cook, P.R. (2008). Similar active genes cluster in specialized transcription factories. J. Cell Biol. 181, 615-623. [PubMed]
Eskiw, C.H., Rapp, A., Carter, D.R.F., and Cook, P.R. (2008). RNA polymerase II activity is located on the surface of ~87 nm protein-rich transcription factories. J. Cell Sci. 121, 1999-2007. [PubMed]
Carter, D.R.F., Eskiw, C., and Cook, P.R. (2008). Transcription factories. Biochem. Soc. Trans. 36, 585-589. [PubMed]
Xu, M., and Cook, P.R. (2008). The role of specialized transcription factories in chromosome pairing. Biochem. Biophys. Acta 1783, 2155-2160. [PubMed]
Cook, P.R., and Marenduzzo, D. (2009). Entropic organization of interphase chromosomes. J. Cell Biol. 186, 825-834. [PubMed]
Wada, Y., Ohta, Y., Xu, M., Tsutsumi, S., Minami, T., Inoue, K., Komura, D., Kitakami, J., Oshida, N., Papantonis, A., Izumi, A., Kobayashi, M., Meguro, H., Kanki, Y., Mimura, I., Yamamoto, K., Mataki, C., Hamakubo, T., Shirahige, K., Aburatani, H., Kimura, H., Kodama, T., Cook. P.R., and Ihara, S. (2009). Visualizing a wave of transcription as it sweeps along activated human genes. Proc. Natl. Acad. Sci. USA, 106, 18357-18361. [PubMed]
Cook, P.R. (2010). A model for all genomes; the role of transcription factories. J. Mol. Biol. 395, 1–10. [PubMed] [pdf]
Papantonis, A., and Cook, P.R. (2010). Genome architecture and the role of transcription. Curr. Opin. Cell. Biol. 22, 1–6. [PubMed]
Papantonis, A., Larkin, J.D., Wada, Y., Ohta, Y., Ihara, S., Kodama, T., and Cook, P.R. (2010). Active RNA polymerases: mobile or immobile molecular machines? PLoS Biol. 8, e1000419. [PubMed] [pdf] [supporting movie]